Search results for "nitrogen cycling"
showing 10 items of 10 documents
Nitrogen cycling microbial communities: from diversity to interactions and functions
2019
Soil microorganisms form one of the largest biodiversity reservoirs on earth. They also play essential roles in ecosystem functions such as biogeochemical cycling. However, the importance of microbial community diversity and composition for ecosystem functioning is still debated. A sound understanding of the ecological processes governing the assembly of these communities in the environment is also missing. In this talk, I will give examples of how we addressed these knowledge gaps using nitrogen cycling microorganisms as model functional guilds. Nitrogen is the most limiting nutrient for crop production in agriculture. The nitrogen cycle is also one which was pushed by human activities out…
Importance of denitrifiers lacking the genes encoding the nitrous oxide reductase for N2O emissions from soil
2010
Analyses of the complete genomes of sequenced denitrifying bacteria revealed that approximately 1/3 have a truncated denitrification pathway, lacking the nosZ gene encoding the nitrous oxide reductase. We investigated whether the number of denitrifiers lacking the genetic ability to synthesize the nitrous oxide reductase in soils is important for the proportion of N2O emitted by denitrification. Serial dilutions of the denitrifying strain Agrobacterium tumefaciens C58 lacking the nosZ gene were inoculated into three different soils to modify the proportion of denitrifiers having the nitrous oxide reductase genes. The potential denitrification and N2O emissions increased when the size of ino…
Legacy effects of contrasting water and N-availability patterns on plantmicrobial response to rewetting
2019
National audience; Introduction. Shifts in the frequency and magnitude of rain events (precipitation regime) associated with climate change may affect plant morphological and physiological strategies as well as soil microbial activity.Objectives. The objective of this study was to determine i) how precipitation history shapes the response dynamics of soil bacterial and fungal communities to rewetting, as well as plant-microbial competition for N, and ii) how the N status of the system may modulate the effect of precipitation regime.Materials & methods. The legacy effects of 12 weeks of contrasting precipitation (frequent or infrequent watering, equal total water input) and N inputs was asse…
Leaf vs. epiphyte nitrogen uptake in a nutrient enriched Mediterranean seagrass (Posidonia oceanica) meadow
2012
Abstract In situ nitrogen uptake by leaves and epiphytes was studied in a Mediterranean seagrass (Posidonia oceanica) meadow impacted from a fish farm and a pristine meadow, using 15NH4 and 15NO3 as tracers. In the impacted meadow both leaves and epiphytes yielded higher N concentrations and showed higher specific N uptake, suggesting a linkage between N uptake and its accumulation. Epiphytes took up N faster than leaves in relation to their corresponding biomass, but when assessed per unit area, N uptake was higher in leaves. Leaf N uptake was negatively correlated with epiphyte N uptake. With increasing epiphyte load on leaves, N leaf uptake decreased while N epiphyte uptake increased, in…
Loss in microbial diversity affects nitrogen cycling in soil
2013
International audience; Microbial communities have a central role in ecosystem processes by driving the Earth's biogeochemical cycles. However, the importance of microbial diversity for ecosystem functioning is still debated. Here, we experimentally manipulated the soil microbial community using a dilution approach to analyze the functional consequences of diversity loss. A trait-centered approach was embraced using the denitrifiers as model guild due to their role in nitrogen cycling, a major ecosystem service. How various diversity metrics related to richness, eveness and phylogenetic diversity of the soil denitrifier community were affected by the removal experiment was assessed by 454 s…
Partitioning of nitrogen during melting and recycling in subduction zones and the evolution of atmospheric nitrogen
2019
Abstract The subduction of sediment connects the surface nitrogen cycle to that of the deep Earth. To understand the evolution of nitrogen in the atmosphere, the behavior of nitrogen during the subduction and melting of subducted sediments has to be estimated. This study presents high-pressure experimental measurements of the partitioning of nitrogen during the melting of sediments at sub-arc depths. For quantitative analysis of nitrogen in minerals and glasses, we calibrated the electron probe micro-analyzer on synthetic ammonium feldspar to measure nitrogen concentrations as low as 500 μg g−1. Nitrogen abundances in melt and mica are used together with mass balance calculations to determi…
Experimental community coalescence sheds light on microbial interactions in soil and restores impaired functions
2023
Abstract Background Microbes typically live in communities where individuals can interact with each other in numerous ways. However, knowledge on the importance of these interactions is limited and derives mainly from studies using a limited number of species grown in coculture. Here, we manipulated soil microbial communities to assess the contribution of interactions between microorganisms for assembly of the soil microbiome. Results By combining experimental removal (taxa depletion in the community) and coalescence (mixing of manipulated and control communities) approaches, we demonstrated that interactions between microorganisms can play a key role in determining their fitness during soi…
Caractérisation des communautés microbiennes dans les technosols construits pour la restauration des friches industrielles
2012
Increasing soil degradation and its consequences on overall ecosystem services urge for restoration strategies. Construction of Technosols through assemblage of treated soil and industrial wastes is an innovative technology for the restoration of polluted land and re-use of industrial by-products. Recent studies have evidenced that Technosols could support ecosystemic services such as primary production but the knowledge about other soil functions, such as biogeochemical cycling, is limited. Due to the significant contribution of microbial communities to soil functioning, this PhD work was carried out to study the effect of the type of Technosol on microbial communities with a focus on func…
Peaks of in situ N2O emissions are influenced by N2O producing and reducing microbial communities across arable soils
2018
International audience; Introduction Agriculture is the main source of terrestrial N2O emissions, a potent greenhouse gas and the main cause of ozone depletion ((Hu et al., 2015). The reduction of N2O into N2 by microorganisms carrying the nitrous oxide reductase gene (nosZ) is the only known biological process eliminating this greenhouse gas. Recent studies showed that a previously unknown clade of N2O-reducers (nosZII) was related to the potential capacity of the soil to act as a N2O sink (see Hallin et al., 2017 and references therein). However little is known about how this group responds to different agricultural practices. Here, we investigated how N2O-producers and N2O-reducers were …
Spatial patterns of, and environmental controls on, soil properties at a riparianepaddock interface
2012
Abstract Riparian zones are prominent features of agricultural landscapes because they are the last point to intercept nutrients and sediments before they enter water bodies. We investigated the soil properties, nutrient dynamics and vegetation composition at the riparian–agriculture interface. Soil physicochemical and vegetation properties were spatially heterogeneous along the transition from the grazed paddock into the un-grazed and revegetated riparian zone. Soil C stocks varied considerably across the site, with values ranging from 2% in the paddock to 5% in the riparian zone. Using Bayesian model selection, a predictive model for total soil carbon was developed. By including soil mois…